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massXpert::Polymer Member List

This is the complete list of members for massXpert::Polymer, including all inherited members.

accountCappingMasses(int, int=1) (defined in massXpert::Polymer)massXpert::Polymer
accountCappingMasses(Polymer *, int, double *, double *, int=1) (defined in massXpert::Polymer)massXpert::Polymer [static]
accountEndModifMasses(int) (defined in massXpert::Polymer)massXpert::Polymer
accountEndModifMasses(Polymer *, int, double *, double *) (defined in massXpert::Polymer)massXpert::Polymer [static]
accountEndModifMasses(Polymer *, int, Ponderable *) (defined in massXpert::Polymer)massXpert::Polymer [static]
accountMasses(const CalcOptions &) (defined in massXpert::Polymer)massXpert::Polymer
accountMasses(Polymer *, const CalcOptions &, double *, double *) (defined in massXpert::Polymer)massXpert::Polymer [static]
massXpert::Ionizable::accountMasses(double *=0, double *=0, int=1) const massXpert::Ponderable [virtual]
appendMonomerText(const QString &)massXpert::Sequence
at(int) const massXpert::Sequence
author() const massXpert::Polymer
avg() const massXpert::Ponderable
avg(const QLocale &, int=10) const massXpert::Ponderable
calculateMasses(const CalcOptions &, bool=true) (defined in massXpert::Polymer)massXpert::Polymer
calculateMasses(Polymer *, const CalcOptions &, double *, double *, bool=true) (defined in massXpert::Polymer)massXpert::Polymer [static]
massXpert::Ionizable::calculateMasses()massXpert::Ionizable [virtual]
charge() const massXpert::Ionizable [virtual]
checksum(int=-1, int=-1, bool=false) const (defined in massXpert::Sequence)massXpert::Sequence
clearMasses()massXpert::Ponderable
clone() const massXpert::Ionizable [virtual]
clone(Ionizable *) const massXpert::Ionizable [virtual]
massXpert::PolChemDefEntity::clone(PolChemDefEntity *) const massXpert::PolChemDefEntity [virtual]
massXpert::Ponderable::clone(Ponderable *) const massXpert::Ponderable [virtual]
code() const massXpert::Polymer
crossLink(CrossLink *) (defined in massXpert::Polymer)massXpert::Polymer
crossLinkChangedSignal(Polymer *) (defined in massXpert::Polymer)massXpert::Polymer [signal]
crossLinkList() const (defined in massXpert::Polymer)massXpert::Polymer
crossLinkListPtr() (defined in massXpert::Polymer)massXpert::Polymer
crossLinksPartiallyEncompassedSignal(int) const (defined in massXpert::Polymer)massXpert::Polymer [signal]
dateTime() const massXpert::Polymer
debugPutStdErr()massXpert::Polymer
decrementAvg(double)massXpert::Ponderable
decrementMono(double)massXpert::Ponderable
deionize()massXpert::Ionizable [virtual]
deionize(Ionizable *) (defined in massXpert::Ionizable)massXpert::Ionizable [static]
filePath() const massXpert::Polymer
findForwardMotif(Sequence *, const PolChemDef *, int *) (defined in massXpert::Sequence)massXpert::Sequence
formatXmlCrossLinksElement(int, const QString &=QString(" ")) (defined in massXpert::Polymer)massXpert::Polymer
formatXmlDtd()massXpert::Polymer
formatXmlPolSeqElement(int, const QString &=QString(" "))massXpert::Polymer
incrementAvg(double)massXpert::Ponderable
incrementMass(double, MassType) (defined in massXpert::Ponderable)massXpert::Ponderable
incrementMono(double)massXpert::Ponderable
insertMonomerAt(const Monomer *, int)massXpert::Sequence
Ionizable(const PolChemDef *, const QString &=QString("NOT_SET"), const Ponderable &=Ponderable(), const IonizeRule &=IonizeRule(), bool=false)massXpert::Ionizable
Ionizable(const Ionizable &)massXpert::Ionizable
ionize()massXpert::Ionizable [virtual]
ionize(const IonizeRule &)massXpert::Ionizable [virtual]
ionize(Ionizable *, const IonizeRule &)massXpert::Ionizable [static]
ionizeRule() const massXpert::Ionizable
ionizeRule()massXpert::Ionizable
isIonized() const massXpert::Ionizable
leftEndModif() const (defined in massXpert::Polymer)massXpert::Polymer
m_authormassXpert::Polymer [private]
m_avgmassXpert::Ponderable [protected]
m_codemassXpert::Polymer [private]
m_crossLinkListmassXpert::Polymer [private]
m_dateTimemassXpert::Polymer [private]
m_filePathmassXpert::Polymer [private]
m_ionizeRulemassXpert::Ionizable [protected]
m_isIonizedmassXpert::Ionizable [protected]
m_leftEndModifmassXpert::Polymer [private]
m_monomassXpert::Ponderable [protected]
m_monomerListmassXpert::Sequence [protected]
m_monomerTextmassXpert::Sequence [protected]
m_namemassXpert::Polymer [private]
m_rightEndModifmassXpert::Polymer [private]
makeMonomerList(const PolChemDef *, bool=true, QList< int > *=0)massXpert::Sequence
makeMonomerText()massXpert::Sequence [virtual]
mass(MassType) const (defined in massXpert::Ponderable)massXpert::Ponderable
masses(double *=0, double *=0) const massXpert::Ponderable
mold(const Ionizable &)massXpert::Ionizable [virtual]
massXpert::PolChemDefEntity::mold(const PolChemDefEntity &)massXpert::PolChemDefEntity [virtual]
massXpert::Ponderable::mold(const Ponderable &)massXpert::Ponderable [virtual]
molecularMass(MassType) (defined in massXpert::Ionizable)massXpert::Ionizable [virtual]
mono() const massXpert::Ponderable
mono(const QLocale &, int=10) const massXpert::Ponderable
monomerIndex(const Monomer *) (defined in massXpert::Sequence)massXpert::Sequence
monomerList() const massXpert::Sequence
monomerListPtr()massXpert::Sequence
monomerText()massXpert::Sequence
monomerText(int, int, bool) const (defined in massXpert::Sequence)massXpert::Sequence
monomerText(const CoordinateList &, bool, bool) const (defined in massXpert::Sequence)massXpert::Sequence
mp_polChemDefmassXpert::PolChemDefEntity [protected]
name() const massXpert::PolChemDefEntity
nextCode(QString *, int *, QString *, int)massXpert::Sequence
operator!=(const Ionizable &) const (defined in massXpert::Ionizable)massXpert::Ionizable [virtual]
massXpert::PolChemDefEntity::operator!=(const PolChemDefEntity &) const massXpert::PolChemDefEntity [virtual]
massXpert::Ponderable::operator!=(const Ponderable &) const massXpert::Ponderable [virtual]
operator=(const Ionizable &)massXpert::Ionizable [virtual]
massXpert::PolChemDefEntity::operator=(const PolChemDefEntity &)massXpert::PolChemDefEntity [virtual]
massXpert::Ponderable::operator=(const Ponderable &)massXpert::Ponderable [virtual]
operator==(const Ionizable &) const (defined in massXpert::Ionizable)massXpert::Ionizable [virtual]
massXpert::PolChemDefEntity::operator==(const PolChemDefEntity &) const massXpert::PolChemDefEntity [virtual]
massXpert::Ponderable::operator==(const Ponderable &) const massXpert::Ponderable [virtual]
polChemDef() const massXpert::PolChemDefEntity
PolChemDefEntity(const PolChemDef *, const QString &=QString("NOT_SET"))massXpert::PolChemDefEntity
PolChemDefEntity(const PolChemDefEntity &)massXpert::PolChemDefEntity
Polymer(const PolChemDef *, const QString &=QString("NOT_SET"), const QString &=QString("NOT_SET"), const QString &=QString("NOT SET"))massXpert::Polymer
polymerDestroyedSignal(Polymer *) (defined in massXpert::Polymer)massXpert::Polymer [signal]
Ponderable(double=0, double=0)massXpert::Ponderable
Ponderable(const Ponderable &)massXpert::Ponderable
prepareMonomerRemoval(Monomer *) (defined in massXpert::Polymer)massXpert::Polymer [virtual]
prepareMonomerRemoval(const Monomer *) (defined in massXpert::Sequence)massXpert::Sequence [virtual]
ravg()massXpert::Ponderable
removeMonomerAt(int)massXpert::Polymer [virtual]
renderXmlCodesElement(const QDomElement &element)massXpert::Polymer
renderXmlCrossLinksElement(const QDomElement &, int) (defined in massXpert::Polymer)massXpert::Polymer
renderXmlPolymerFile(QString=QString(""))massXpert::Polymer
renderXmlPolymerModifElement(const QDomElement &, int) (defined in massXpert::Polymer)massXpert::Polymer
renderXmlPolymerModifElement(const QDomElement &) (defined in massXpert::Polymer)massXpert::Polymer
renderXmlPolymerModifElementV3(const QDomElement &) (defined in massXpert::Polymer)massXpert::Polymer
renderXmlPolymerModifElementV4(const QDomElement &) (defined in massXpert::Polymer)massXpert::Polymer
rightEndModif() const (defined in massXpert::Polymer)massXpert::Polymer
rmono()massXpert::Ponderable
Sequence(const QString &=QString())massXpert::Sequence
setAuthor(const QString &)massXpert::Polymer
setAvg(double)massXpert::Ponderable
setAvg(const QString &, const QLocale &)massXpert::Ponderable
setCharge(int)massXpert::Ionizable
setCode(const QString &)massXpert::Polymer
setDateTime(const QString &)massXpert::Polymer
setFilePath(const QString &)massXpert::Polymer
setLeftEndModif(const QString &=QString()) (defined in massXpert::Polymer)massXpert::Polymer
setLeftEndModif(const Modif &) (defined in massXpert::Polymer)massXpert::Polymer
setMass(double, MassType) (defined in massXpert::Ponderable)massXpert::Ponderable
setMasses(double, double)massXpert::Ponderable
setMono(double)massXpert::Ponderable
setMono(const QString &, const QLocale &)massXpert::Ponderable
setMonomerText(const QString &)massXpert::Sequence
setName(const QString &)massXpert::PolChemDefEntity
setPolChemDef(PolChemDef *) (defined in massXpert::PolChemDefEntity)massXpert::PolChemDefEntity
setRightEndModif(const QString &=QString()) (defined in massXpert::Polymer)massXpert::Polymer
setRightEndModif(const Modif &) (defined in massXpert::Polymer)massXpert::Polymer
size() const massXpert::Sequence
uncrossLink(CrossLink *) (defined in massXpert::Polymer)massXpert::Polymer
unspacifyMonomerText()massXpert::Sequence
validate() (defined in massXpert::Polymer)massXpert::Polymer
validate(const PolChemDef *) (defined in massXpert::Sequence)massXpert::Sequence
validate() const (defined in massXpert::PolChemDefEntity)massXpert::PolChemDefEntity [virtual]
writeXmlFile()massXpert::Polymer
xmlPolymerFileGetPolChemDefName(const QString &filePath)massXpert::Polymer [static]
~Ionizable()massXpert::Ionizable [virtual]
~PolChemDefEntity() (defined in massXpert::PolChemDefEntity)massXpert::PolChemDefEntity [virtual]
~Polymer()massXpert::Polymer [virtual]
~Ponderable()massXpert::Ponderable [virtual]
~Sequence()massXpert::Sequence [virtual]


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